6. Conclusion
Many of the microbial functionalities relate to nutrient availability, accessibility, acquisition, recycling and remediation in the soils, hence the presence of dominant communities may be linked with the prominent indicators for characteristic ecosystem functions of the soils. Studies on habitat-specific functional microbial communities as prominent indicators raise hope for developing region or agro-climatic zone-specific microbial inoculants for successful implications in the agriculture and environment. Enhanced applications of microbial inoculants (biofertilizers, biofungicides, biopesticides, bioremediators, biodegraders, microbe-based decomposers) as a supplement to reduce dependency of farmers on chemical farm inputs can promote the scope of integrated nutrient and pest management practices for sustainable agriculture. This can help in designing nutrient doses, practices on nutrient use efficiency and amendments in Integrated Nutrient Management (INM) strategies for better crops. Understanding microbial behavior, their habitats and functions is also important for preparative prevention of disturbed management caused due to abiotic, agronomic and disease conditions before any non-repairable damage in the agroecosystem. Coupling the applications of high throughput polyphasic microbial identification and trait characterization with the metaomics approaches can generate deeper understanding on microbial communities characteristics, functions, interactions, signaling and communication processes in the soils and with the plants to offer real time diagnostics for sustainably maintaining soil health for better crops in a more sustainable manner.